SNP Profiles of RB 37   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCAACCCCCTAATTGGCTTTAAGGCCAA
1._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
2._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
3._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
4._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
5._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
6._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
7._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
8._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
9._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
10._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
11._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
12._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
13._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
14._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
15._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
16._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
17._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
18._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
19._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
20._GC-01-043-2-20
CCAACCCCCTAATTGGCTTTAAGGCCAA
21._RB_37_[BRA]
CCAACCCCCTAATTGGCTTTAAGGCCAA
22._RUQ_1705
__CC____GG_TT_GG_AA
23._RB_37_[BRA]
CCAACCCTCCAATTGGTT_AAGGCTAA
24._RB_37_[BRA]
_AACCCCCCAATTGGTT_AAGGCTAA
25._RUQ_135
CCAGCCCCCCAATTGGCTCTAAGGCTAA
26._GC-01-43-2-20
GGAAGGGGAGAAAACC__AAGGGGAA
27._GC-01-43-2-20
GGAAGGGGAG_AACC__AAGGGGAA
 1516171819202122232425262728
_Input profile
CCAAGGTTTTGGGGAACCACGGGGCCCC
1._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
2._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
3._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
4._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
5._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
6._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
7._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
8._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
9._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
10._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
11._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
12._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
13._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
14._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
15._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
16._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
17._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
18._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
19._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
20._GC-01-043-2-20
CCAAGGTTTTGGGGAACCACGGGGCCCC
21._RB_37_[BRA]
CCAAGGTTTTGGGGAACCACGGGGCCCC
22._RUQ_1705
_____GGGGAA_CCGG__AA
23._RB_37_[BRA]
CCAACGCTTTGGGGAACCCCGGGGCCAC
24._RB_37_[BRA]
CCAACGCTTTGGGGAACCCCGG_CCAC
25._RUQ_135
CCAACGCTCTGGGGAACCCCGGGGCCAC
26._GC-01-43-2-20
GGAAGGAAAACCCC_GGACCGCC_CC
27._GC-01-43-2-20
GGAAGGAAAACCCC_GGACCGCC_CC
 2930313233343536373839   
_Input profile
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
1._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
2._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
3._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
4._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
5._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
6._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
7._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
8._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
9._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
10._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
11._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
12._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
13._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
14._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
15._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
16._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
17._RB_37_[BRA]
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
18._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
19._GC-01-043-2-20
AGGGAATTAAGGTTGGCCAAGGX_XX_XX_X
20._GC-01-043-2-20
AGGGAACCAAGGTTGGCCAAGGX_XX_XX_X
21._RB_37_[BRA]
AGGGAACCAAGGTTGGCCAAGGX_XX_XX_X
22._RUQ_1705
____AA___AC__X_XX_XX_X
23._RB_37_[BRA]
AA_AACTAA__GGACAAGGX_XX_XX_X
24._RB_37_[BRA]
_GGAACTAA_CCGGACAAGGX_XX_XX_X
25._RUQ_135
AAGGAACTAAGGCCGGACAAGGX_XX_XX_X
26._GC-01-43-2-20
_GGAAAAAACCAACCCCAAGGX_XX_XX_X
27._GC-01-43-2-20
_GGAAAAAACCAACCCCAAGGX_XX_XX_X

Input profile: RB_37_[BRA]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

1._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

2._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

10._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

11._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

12._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

13._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

14._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

15._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

16._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

17._RB_37_[BRA]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._RB_37_[BRA] GC-01-043-2-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

20._RB_37_[BRA] GC-01-043-2-20

97.4 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._RB_37_[BRA]

97.4 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

22._RB_37_[BRA] RUQ_1705

84.6 %
13 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_37_[BRA]

83.8 %
34 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_135

82.1 %
39 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._RB_37_[BRA] GC-01-43-2-20

45.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

43.9 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25